| Sat 26/07/25 | South Liverpool v Stockport Town * | 0-3 | |  | | | | |
| Tue 29/07/25 | Abbey Hey v Stockport Town * | 0-3 | | | | | | |
| Sat 09/08/25 | Stockport Town v Padiham * | 1-2 | | | | | | |
| Mon 11/08/25 | Stockport Town v Prestwich Heys * | 1-1 | | | | | | |
| Sat 23/08/25 | Stockport Town v Selby Town (CUP) * | 3-0 | | | | | | |
| Sat 06/09/25 | Stockport Town v Litherland REMYCA * | 1-0 | | | | | | |
| Wed 10/09/25 | Pilkington v Stockport Town * | 1-2 | | | | | | |
| Tue 23/09/25 | Barnoldswick Town v Stockport Town * | 3-3 | | | | | | |
| Sat 27/09/25 | Stockport Town v Prestwich Heys (CUP) | 2-3 | | | | | | |
| Sat 04/10/25 | Stockport Town v Irlam | 0-3 | | | | | | |
| Tue 07/10/25 | Glossop North End v Stockport Town | 1-2 |  | | | | |  |
| Sat 11/10/25 | Wythenshawe v Stockport Town | 2-1 | | | |  | | |
| Mon 13/10/25 | Stockport Town v Hyde United (CUP) | 4-1 | | | | | | |
| Sat 18/10/25 | Stockport Town v Abbey Hey | 2-2 | | | | | | |
| Mon 20/10/25 | Stockport Town v City of Liverpool | 0-2 | | | | | | |
| Sat 25/10/25 | FC St Helens v Stockport Town | 1-1 | | | | | | |
| Sat 01/11/25 | Stockport Town v Chadderton | 1-1 | | | | | | |
| Sat 08/11/25 | Stockport Town v Glossop North End | 1-2 | | | | | | |
| Sat 15/11/25 | Stockport Town v Barnoldswick Town | 2-0 | | | | | | |
| Sat 29/11/25 | Stockport Town v Longridge Town * | 1-2 | | | | | | |
| Wed 03/12/25 | West Didsbury & Chorlton v Stockport Town * | 1-3 | | | | | | |
| Sat 06/12/25 | Stockport Town v FC St Helens * | 0-4 | | | | | | |
| Fri 12/12/25 | Cheadle Town v Stockport Town * | 1-2 | | | | | | |
| Sat 20/12/25 | Stockport Town v Charnock Richard * | 0-3 | | | | | | |
| Sat 27/12/25 | FC Isle of Man v Stockport Town * | 0-4 | | | | | | |
| Sat 10/01/26 | Stockport Town v Ramsbottom United * | 1-1 | | | | | | |
